Installation Installation Running PTM-POSE Formatting Data Identifying differentially included PTMs Altered Flanking Sequences Using PTM-POSE with MATS or SpliceSeq datasets MATS datasets SpliceSeq datasets Filtering PTMs and Events Types of Available Filters How to Filter PTMs and Events Filtering PTMs during Projection Filtering PTMs during analysis Why Filter? Impact of Filtering PTMs by evidence Annotating PTMs with Functional Information Annotating PTMs with pre-installed annotation files Updating annotation files Creating Custom Annotation files Future Directions