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PTM-POSE

Instructions:

  • Overview
  • Dependencies
  • Installation
  • PTM-POSE Reference
  • Running PTM-POSE

Examples

  • Types of Analysis Performed with PTM-POSE
    • Identify protein interactions that may be impacted by splicing of PTMs
    • Inspecting number of PTMs with annotation information available
    • Identify kinases with enriched substrates in differentially included exons, using an adapted version of KSTAR
    • Probing where and how PTM flanking sequences are altered
  • Full Analysis Examples
    • Project PTMs onto ESRP1 knockdown data from MATS (Yang et al, 2016)

Troubleshooting

  • Frequently Asked Questions

Python Module Index

p
 
p
- ptm_pose
    ptm_pose.analyze
    ptm_pose.annotate
    ptm_pose.flanking_sequences
    ptm_pose.pose_config
    ptm_pose.project

By Naegle Lab

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