Analyze Results

Analyze Results#

NOTE: The galaxy interface for KSTAR is not yet available for users, but will be coming soon! If you have any questions or would like to be notified when it is available please feel free to contact the KSTAR team.

Once you have completed your KSTAR run on Galaxy (see Running_KSTAR), you will want to analyze the results. This guide will walk you through the steps necessary to do so.

First, you can do a quick inspection of your results by looking at the summary PDF files. You may also want to check the mapping stats file to make sure your data was mapped reasonably well to the KSTAR reference phosphoproteome.

For additional downstream analysis and visualization of your KSTAR results, you can:

  • Use the KSTAR plotting tools available at the ProteomeScout repository: KSTAR Plotting tool

  • Download your KSTAR results and analyze them in Python using the KSTAR Python package (see Analyzing_Results for more details)

  • Export your KSTAR results to other tools available on Galaxy for further analysis (e.g., clustering, heatmaps, etc.)