KSTAR

Contents:

• Overview
• Dependencies
• KSTAR
  • The “Config” Module
  • The “Prune” Module
  • The “ExperimentMapper” class
  • The “KinaseActivity” class
  • The “DotPlot” class
  • Supporting Functions
• Getting Started
  • Installation
  • Configuring your KSTAR environment
  • Follow the provided tutorial
• Tutorial
  • Network Generation
  • Activity Prediction
  • Plotting
  • Additional Analyses
• Analysis Examples
  • Activation of Kinases in Controlled Cell Lines
  • Inhibition of Kinases in Controlled Cell Lines
  • Profiling HER2 therapy response in Breast Cancer
• KSTAR in Parallel
  • Option 1: Running KSTAR using Multiprocessing
  • Option 2: Running Large Datasets with Nextflow
• Frequently Asked Questions
  • Data Preparation
  • Choosing Parameter Values
  • Interpreting Results

Indices and tables

• Index

• Module Index

• Search Page