Index

A

align_sites() (kstar.mapping.ExperimentMapper method)

B

build_multiple_compendia_networks() (kstar.prune.Pruner method)

build_pruned_network() (kstar.prune.Pruner method)

C

calculate_compendia_sizes() (kstar.prune.Pruner method) calculate_kinase_activities() (kstar.calculate.KinaseActivity method) calculate_Mann_Whitney_activities_sig() (kstar.calculate.KinaseActivity method) calculate_random_activities() (kstar.calculate.KinaseActivity method) check_data_columns() (kstar.calculate.KinaseActivity method)

cluster() (kstar.plot.DotPlot method) compendia_pruned_network() (kstar.prune.Pruner method) context() (kstar.plot.DotPlot method) convert_acc_to_uniprot() (in module kstar.helpers) create_binary_evidence() (kstar.calculate.KinaseActivity method) create_network_pickles() (in module kstar.config)

D

DotPlot (class in kstar.plot) dotplot() (kstar.plot.DotPlot method)

drop_kinases() (kstar.plot.DotPlot method) drop_kinases_with_no_significance() (kstar.plot.DotPlot method)

E

enrichment_analysis() (in module kstar.calculate)

ExperimentMapper (class in kstar.mapping)

F

from_kstar_nextflow() (in module kstar.calculate)

from_kstar_slim() (in module kstar.calculate)

G

get_experiment() (kstar.mapping.ExperimentMapper method) get_logger() (in module kstar.helpers)

get_run_date() (kstar.calculate.KinaseActivity method) get_sequence() (kstar.mapping.ExperimentMapper method)

I

install_resource_files() (in module kstar.config)

K

KinaseActivity (class in kstar.calculate) kstar module kstar.calculate module, [1]

kstar.config module kstar.helpers module kstar.prune module

M

Mann_Whitney_analysis() (in module kstar.calculate) module kstar kstar.calculate, [1] kstar.config kstar.helpers kstar.prune

P

process_fasta_file() (in module kstar.helpers)

Pruner (class in kstar.prune)

R

randomized_analysis() (in module kstar.calculate)

run_pruning() (in module kstar.prune)

S

save_kstar() (in module kstar.calculate) save_kstar_slim() (in module kstar.calculate) save_pruning() (in module kstar.prune)

save_run_information() (in module kstar.prune) set_data_columns() (kstar.calculate.KinaseActivity method) (kstar.mapping.ExperimentMapper method) string_to_boolean() (in module kstar.helpers)

U

update_network_directory() (in module kstar.config)