Index

A

add_reference_info_to_struct_file() (in module CoDIAC.IntegrateStructure_Reference)

appendRefFile() (in module CoDIAC.InterPro)

B

BinaryFeatures() (in module CoDIAC.AdjacencyFiles)

C

CoDIAC.AdjacencyFiles module CoDIAC.AlphaFold module CoDIAC.contactMap module CoDIAC.IntegrateStructure_Reference module CoDIAC.InterPro module CoDIAC.jalviewFunctions module

CoDIAC.mutations module CoDIAC.PDB module CoDIAC.PTM module CoDIAC.translateFeatures module CoDIAC.UniProt module combine_feature_files() (in module CoDIAC.jalviewFunctions)

F

fetch_uniprotids() (in module CoDIAC.InterPro)

filter_structure_file() (in module CoDIAC.IntegrateStructure_Reference)

G

generateStructureRefFile_fromUniprotFile() (in module CoDIAC.PDB)

gnomAD_mutations() (in module CoDIAC.mutations)

M

makeRefFile() (in module CoDIAC.AlphaFold) (in module CoDIAC.UniProt) module CoDIAC.AdjacencyFiles CoDIAC.AlphaFold CoDIAC.contactMap CoDIAC.IntegrateStructure_Reference CoDIAC.InterPro CoDIAC.jalviewFunctions CoDIAC.mutations CoDIAC.PDB CoDIAC.PTM CoDIAC.translateFeatures CoDIAC.UniProt

O

OMIM_mutations() (in module CoDIAC.mutations)

P

PDB_mutations() (in module CoDIAC.mutations) print_ann_file() (in module CoDIAC.jalviewFunctions)

print_domain_fasta_file() (in module CoDIAC.UniProt) print_fasta_feature_files() (in module CoDIAC.contactMap) ProcessArpeggio() (in module CoDIAC.AdjacencyFiles)

R

return_interChain_adj() (in module CoDIAC.contactMap)

return_translated_features() (in module CoDIAC.translateFeatures)

T

translate_chainMap_to_RefSeq() (in module CoDIAC.contactMap)

translate_fasta_back() (in module CoDIAC.UniProt) translate_fasta_to_new_headers() (in module CoDIAC.UniProt)

W

write_PTM_features() (in module CoDIAC.PTM)