Jalview Tools

CoDIAC.jalviewFunctions.combine_feature_files(output_file, feature_file_list)

Given a list of feature files, combine them and print the new feature file

CoDIAC.jalviewFunctions.print_ann_file(feature_file, alignment_file, annotation_file)

Given feature annotations, such as created by return_feature_ann_dict, print a Jalview Annotation file with bargraphs.

Parameters:

feature_file: string

location of feature file to convert into an annotation track file

alignment_file: str

location of the alignment file to base the annotation track file for

annotation_file: str

This is the name of the file to output the annotation tracks to, it will be overwritten