Examples

Demo of the CoDIAC package - the full pipeline

• Reference Structure Files generation
• Reference FASTA file generation
• Feature and annotation files generation

Adjacency file generation

• Generate mmCIF files for PDBs of interest
• Generate json files using Arpeggio
• Generate Adjacency txt files

Contact mapping

• Analysis using PDB structures
• A. Domain-domain contact interface extraction
• B. Ligand interface contact extraction using PDB structures
• Analysis using AlphaFold structures