Examples
=========================================

Demo of the CoDIAC package - the full pipeline
----------------------------------------------

.. toctree::
   :maxdepth: 1

   SH2_get_specific_proteins_example.ipynb

Adjacency file generation
-------------------------
.. toctree::
   :maxdepth: 1

   AdjacencyFiles_generation.ipynb

Contact mapping 
---------------
.. toctree::
   :maxdepth: 1

   contacts_extraction.ipynb