=============== Installation =============== Here, we have provided a quick start guide that will allow you to get up and running quickly and able to project PTMs on any splicing dataset you might have Installation ------------ PTM-POSE can be installed via `pip`, tarball, and directly from the Git repository. We recommend using pip to install the most well-tested version of the package, but check our development branch on the GitHub repository to see some of the additional analyses/data we are adding to the package! ==================================== ================================================================================ Install Method Code ==================================== ================================================================================ pip .. code-block:: bash # with just the core package pip install ptm-pose # with optional dependencies for downstream analyses pip install ptm-pose[full_analysis] conda .. code-block:: bash conda install conda-forge::ptm-pose Github Release .. code-block:: bash wget https://github.com/NaegleLab/PTM-POSE/archive/refs/tags/.tar.gz tar -xvf PTM-POSE-.tar.gz cd PTM-POSE- python setup.py install Git Clone (for development version) .. code-block:: bash git clone https://github.com/NaegleLab/PTM-POSE cd PTM-POSE git checkout dev python setup.py install ==================================== ================================================================================