Index

B

build_network_reference_dict() (in module dansy.network_separation_helpers)

C

calc_DEG_ngrams() (dansy.DEdansy method) calculate_fpr() (in module dansy.enrichment_helpers) calculate_ngram_enrichment() (dansy.DEdansy method) calculate_scores() (dansy.DEdansy method)

calculate_separation_stability() (in module dansy.enrichment_helpers) cohen_d() (in module dansy.enrichment_helpers) collapse_to_max_info() (in module dansy.enrichment_plotting_helpers) create_contrast_metadata() (dansy.DEdansy method) create_DANSy_dirs() (in module dansy.config)

D

dansy (class in dansy) dansy.config module dansy.enrichment_helpers module dansy.enrichment_plotting_helpers module

dansy.helper module dansy.network_separation_helpers module DEdansy (class in dansy) DEG_network_sep() (dansy.DEdansy method) deg_summary() (dansy.DEdansy method) draw_network() (dansy.dansy method)

G

gather_enrichment_results() (in module dansy.enrichment_plotting_helpers)

get_max_info_enriched_ngrams() (in module dansy.enrichment_plotting_helpers) get_ngram_results() (dansy.DEdansy method)

I

import_proteome_files() (in module dansy.helper)

individual_trial_calc() (in module dansy.enrichment_helpers)

M

module dansy.config dansy.enrichment_helpers dansy.enrichment_plotting_helpers dansy.helper dansy.network_separation_helpers

N

network_separation() (in module dansy.network_separation_helpers)

ngram_protein_count() (dansy.dansy method)

P

plot_DEG_ns() (dansy.DEdansy method) plot_enriched_ngrams() (in module dansy.enrichment_plotting_helpers)

plot_functional_scores() (in module dansy.enrichment_plotting_helpers) plot_ngram_enrichment() (dansy.DEdansy method) plot_scores() (dansy.DEdansy method)

R

retrieve_fpr_checks() (in module dansy.enrichment_helpers) retrieve_longest_arch() (dansy.dansy static method)

retrieve_protein_info() (dansy.dansy method) retrieve_random_ids() (dansy.dansy method)

S

summary() (dansy.dansy method)

U

update_proteome_version() (in module dansy.config)